OCA Atlas for 5GIW

5GIW

Apoptosis

date

Jun 25, 2016

title

Solution Nmr Structure Of Humanin Containing A D-Isomerized Residue

authors

K.Furuita, T.Sugiki, N.Alsanousi, T.Fujiwara, C.Kojima

compound

source

Molecule: Humanin
Chain: X
Synonym: Humanin Mitochondrial,Hnm
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

method

Solution NMR

ligand

DSN

enzyme

Gene
Ontology

Chain	Function	Process	Component
X	receptor antagonist activity...

Primary reference

Solution NMR structure and inhibitory effect against amyloid-beta fibrillation of Humanin containing a d-isomerized serine residue., Alsanousi N, Sugiki T, Furuita K, So M, Lee YH, Fujiwara T, Kojima C, Biochem Biophys Res Commun. 2016 Jun 25. pii: S0006-291X(16)31032-4. doi:, 10.1016/j.bbrc.2016.06.114. PMID:27349871

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]

Biological Unit Coordinates (5giw.pdb1.gz) 7 Kb

LPC: Ligand-Protein Contacts for 5GIW

CSU: Contacts of Structural Units for 5GIW

Original NMR restraints for 5GIW from PDB

Retrieve 5GIW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5GIW from S2C, [Save to disk]

View 5GIW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GIW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5giw] [5giw_X]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5GIW

Community annotation for 5GIW at PDBWiki (http://pdbwiki.org)

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