5GKP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	MG	enzyme
Gene Ontology	Chain Function Process Component B, A
Primary reference	Crystal structure of endonuclease G in complex with DNA reveals how it nonspecifically degrades DNA as a homodimer., Lin JL, Wu CC, Yang WZ, Yuan HS, Nucleic Acids Res. 2016 Dec 1;44(21):10480-10490. Epub 2016 Oct 13. PMID:27738134

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (160 Kb) [Save to disk] Biological Unit Coordinates (5gkp.pdb1.gz) 155 Kb LPC: Ligand-Protein Contacts for 5GKP CSU: Contacts of Structural Units for 5GKP Structure Factors (516 Kb) Retrieve 5GKP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GKP from S2C, [Save to disk] Re-refined 5gkp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GKP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gkp] [5gkp_A] [5gkp_B] [5gkp_C] [5gkp_D] SWISS-PROT database: Domains found in 5GKP: [Endonuclease_NS] [NUC ] by SMART

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022,2024 Bioinformatics Unit Weizmann Institute of Science

---