5GKR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceClonal evolution and antigen recognition of anti-nuclear antibodies in acute systemic lupus erythematosus., Sakakibara S, Arimori T, Yamashita K, Jinzai H, Motooka D, Nakamura S, Li S, Takeda K, Katayama J, El Hussien MA, Narazaki M, Tanaka T, Standley DM, Takagi J, Kikutani H, Sci Rep. 2017 Nov 27;7(1):16428. doi: 10.1038/s41598-017-16681-y. PMID:29180749
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (5gkr.pdb1.gz) 132 Kb
  • Biological Unit Coordinates (5gkr.pdb2.gz) 129 Kb
  • CSU: Contacts of Structural Units for 5GKR
  • Structure Factors (931 Kb)
  • Retrieve 5GKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GKR from S2C, [Save to disk]
  • Re-refined 5gkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gkr_A] [5gkr_B] [5gkr_C] [5gkr_D] [5gkr_T]
  • SWISS-PROT database:

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