5GM8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	SFG	enzyme
Gene Ontology	Chain Function Process Component B, D, A, C
Primary reference	Methylation at position 32 of tRNA catalyzed by TrmJ alters oxidative stress response in Pseudomonas aeruginosa., Jaroensuk J, Atichartpongkul S, Chionh YH, Wong YH, Liew CW, McBee ME, Thongdee N, Prestwich EG, DeMott MS, Mongkolsuk S, Dedon PC, Lescar J, Fuangthong M, Nucleic Acids Res. 2016 Dec 15;44(22):10834-10848. doi: 10.1093/nar/gkw870. Epub , 2016 Sep 28. PMID:27683218

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk] Biological Unit Coordinates (5gm8.pdb1.gz) 57 Kb Biological Unit Coordinates (5gm8.pdb2.gz) 57 Kb LPC: Ligand-Protein Contacts for 5GM8 CSU: Contacts of Structural Units for 5GM8 Structure Factors (959 Kb) Retrieve 5GM8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GM8 from S2C, [Save to disk] Re-refined 5gm8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GM8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gm8] [5gm8_A] [5gm8_B] [5gm8_C] [5gm8_D] SWISS-PROT database:

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