5GMK		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	GTP, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A metallopeptidase activity C F G H U2-type catalytic step 2 spl... I U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... J O P U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... Q R U2-type catalytic step 1 spl... U2-type catalytic step 2 spl... S T Z a b c U2-type catalytic step 1 spl... d, v e, g h, w i, u m, z n r, p, o, q U2-type catalytic step 1 spl... s, k t U2-type catalytic step 1 spl... x, j y, l
Primary reference	Structure of a yeast catalytic step I spliceosome at 3.4 A resolution., Wan R, Yan C, Bai R, Huang G, Shi Y, Science. 2016 Aug 26;353(6302):895-904. doi: 10.1126/science.aag2235. Epub 2016, Jul 21. PMID:27445308

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1473 Kb) [Save to disk] Biological Unit Coordinates (5gmk.pdb1.gz) 1436 Kb LPC: Ligand-Protein Contacts for 5GMK CSU: Contacts of Structural Units for 5GMK Retrieve 5GMK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GMK from S2C, [Save to disk]

View 5GMK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gmk_I] [5gmk_J] [5gmk] [5gmk_A] [5gmk_B] [5gmk_C] [5gmk_D] [5gmk_E] [5gmk_F] [5gmk_G] [5gmk_H] [5gmk_L] [5gmk_M] [5gmk_N] [5gmk_O] [5gmk_P] [5gmk_Q] [5gmk_R] [5gmk_S] [5gmk_T] [5gmk_Z] [5gmk_a] [5gmk_b] [5gmk_c] [5gmk_d] [5gmk_e] [5gmk_g] [5gmk_h] [5gmk_i] [5gmk_j] [5gmk_k] [5gmk_l] [5gmk_m] [5gmk_n] [5gmk_o] [5gmk_p] [5gmk_q] [5gmk_r] [5gmk_s] [5gmk_t] [5gmk_u] [5gmk_v] [5gmk_w] [5gmk_x] [5gmk_y] [5gmk_z] SWISS-PROT database: Domains found in 5GMK: [Cir_N] [EFG_C] [EFG_IV] [HAT] [JAB_MPN] [LRRcap] [MA3] [MIF4G] [RRM] [SANT] [Sm] [Ubox] [WD40] [cwf21 ] by SMART

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