5GNA Gene Regulation date Jul 20, 2016
title Crystal Structure Of Flagellin Assembly Related Protein
authors H.J.Kim, H.H.Lee
compound source
Molecule: Flagellar Protein Flit
Chain: A
Fragment: Unp Residues 1-94
Engineered: Yes
Organism_scientific: Salmonella Typhimurium (Strain Lt2 S Atcc 700720);
Organism_taxid: 99287
Strain: Lt2 Sgsc1412 Atcc 700720
Gene: Flit, Stm1962
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Flagellar Hook-Associated Protein 2
Chain: B
Fragment: Unp Residues 401-467
Synonym: Hap2,Filament Cap Protein,Flagellar Cap Protein
Engineered: Yes

Organism_scientific: Salmonella Typhimurium (Strain Lt2 S Atcc 700720);
Organism_taxid: 99287
Strain: Lt2 Sgsc1412 Atcc 700720
Gene: Flid, Flav, Flbc, Stm1960
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.214 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.446 50.446 184.579 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (33 Kb) [Save to disk]
  • Biological Unit Coordinates (5gna.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 5GNA
  • Structure Factors (243 Kb)
  • Retrieve 5GNA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GNA from S2C, [Save to disk]
  • Re-refined 5gna structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5GNA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5GNA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gna_A] [5gna_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5GNA
  • Community annotation for 5GNA at PDBWiki (http://pdbwiki.org)

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