5GNF Unknown Function date Jul 20, 2016
title Crystal Structure Of Anti-Crispr Protein Acrf3
authors J.Wang, Y.Wang
compound source
Molecule: Uncharacterized Protein Acrf3
Chain: A, B
Engineered: Yes
 Organism_scientific: Pseudomonas Phage Jbd5
Organism_taxid: 1223261
Gene: Jbd5_035
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 65
R_factor 0.170 R_Free 0.192
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.944 84.944 63.155 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand CA enzyme
Gene JBD5
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA CRISPR evolutionary arms race: structural insights into viral anti-CRISPR/Cas responses., Wang J, Ma J, Cheng Z, Meng X, You L, Wang M, Zhang X, Wang Y, Cell Res. 2016 Sep 2;26(10):1165-1168. doi: 10.1038/cr.2016.103. Epub 2016 Sep 2. PMID:27585537
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5gnf.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5GNF
  • CSU: Contacts of Structural Units for 5GNF
  • Structure Factors (601 Kb)
  • Retrieve 5GNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GNF from S2C, [Save to disk]
  • Re-refined 5gnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GNF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gnf_A] [5gnf] [5gnf_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GNF
  • Community annotation for 5GNF at PDBWiki (http://pdbwiki.org)

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