5GRB Hydrolase Inhibitor date Aug 09, 2016
title Crystal Structure Of 2c Helicase From Enterovirus 71 (Ev71) Atpgammas
authors H.X.Guan, J.Tian, B.Qin, J.Wojdyla, M.T.Wang, S.Cui
compound source
Molecule: Ev71 2c Atpase
Chain: A, B, C, D, E, F
Engineered: Yes
Mutation: Yes
Other_details: Ev71 2c Variant Lacks N-Terminal 1-115aa And Mutation E207a, K209a.
 Organism_scientific: Enterovirus
Organism_taxid: 12059
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.245 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.668 54.912 163.097 90.00 89.98 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand AGS, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (204 Kb) [Save to disk]
  • Biological Unit Coordinates (5grb.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (5grb.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (5grb.pdb3.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 5GRB
  • CSU: Contacts of Structural Units for 5GRB
  • Structure Factors (1784 Kb)
  • Retrieve 5GRB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GRB from S2C, [Save to disk]
  • Re-refined 5grb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5GRB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5GRB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5grb_C] [5grb_D] [5grb_F] [5grb_B] [5grb_A] [5grb_E] [5grb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GRB
  • Community annotation for 5GRB at PDBWiki (http://pdbwiki.org)

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