5GSA	Transferase Transferase Inhibitor	date	Aug 15, 2016
title	Eed In Complex With An Allosteric Prc2 Inhibitor
authors	K.Zhao, M.Zhao, X.Luo, H.Zhang
compound		source
Molecule: Polycomb Protein Eed Chain: A, B Fragment: Unp Residues 76-441 Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Eed Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Histone-Lysine N-Methyltransferase Ezh2 Chain: C, D Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6; Ec: 2.1.1.43 Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.182 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.793 177.908 50.532 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.49 Å
ligand	73K	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B D, C
Primary reference	An allosteric PRC2 inhibitor targeting the H3K27me3 binding pocket of EED., Qi W, Zhao K, Gu J, Huang Y, Wang Y, Zhang H, Zhang M, Zhang J, Yu Z, Li L, Teng L, Chuai S, Zhang C, Zhao M, Chan H, Chen Z, Fang D, Fei Q, Feng L, Feng L, Gao Y, Ge H, Ge X, Li G, Lingel A, Lin Y, Liu Y, Luo F, Shi M, Wang L, Wang Z, Yu Y, Zeng J, Zeng C, Zhang L, Zhang Q, Zhou S, Oyang C, Atadja P, Li E, Nat Chem Biol. 2017 Apr;13(4):381-388. doi: 10.1038/nchembio.2304. Epub 2017 Jan , 30. PMID:28135235

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (136 Kb) [Save to disk] Biological Unit Coordinates (5gsa.pdb1.gz) 67 Kb Biological Unit Coordinates (5gsa.pdb2.gz) 67 Kb LPC: Ligand-Protein Contacts for 5GSA CSU: Contacts of Structural Units for 5GSA Structure Factors (833 Kb) Retrieve 5GSA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GSA from S2C, [Save to disk] Re-refined 5gsa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GSA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GSA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gsa] [5gsa_D] [5gsa_B] [5gsa_A] [5gsa_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5GSA

Community annotation for 5GSA at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---