5GSE	Structural Protein Dna	date	Aug 16, 2016
title	Crystal Structure Of Unusual Nucleosome
authors	D.Kato, A.Osakabe, Y.Arimura, S.Y.Park, H.Kurumizaka
compound		source
Molecule: Histone H3.1 Chain: A, E, K, O Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h3a Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph3.1
Molecule: Histone H4 Chain: B, F, L, P Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h4a Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph4
Molecule: Histone H2a Type 1-Be Chain: C, G, M Synonym: Histone H2a.2,Histone H2aa,Histone H2am Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2ab Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2a
Molecule: Histone H2b Type 1-J Chain: D, H, N Synonym: Histone H2b.1,Histone H2b.R,H2br Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hist1h2bj Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Ph2b
Molecule: Dna (250-Mer) Chain: I Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Dh5a Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T Easy
Molecule: Dna (250-Mer) Chain: J Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgem-T Easy
symmetry	Space Group: P 1	R_factor 0.197 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 90.582 101.804 102.427 119.30 106.51 91.36
method	X-Ray Diffraction	resolution	3.14 Å
ligand	5CM	enzyme
Gene Ontology	Chain Function Process Component A, O, K, E F, P, B, L M, C, G N, H, D
Primary reference	Crystal structure of the overlapping dinucleosome composed of hexasome and octasome., Kato D, Osakabe A, Arimura Y, Mizukami Y, Horikoshi N, Saikusa K, Akashi S, Nishimura Y, Park SY, Nogami J, Maehara K, Ohkawa Y, Matsumoto A, Kono H, Inoue R, Sugiyama M, Kurumizaka H, Science. 2017 Apr 14;356(6334):205-208. doi: 10.1126/science.aak9867. PMID:28408607

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (406 Kb) [Save to disk] Biological Unit Coordinates (5gse.pdb1.gz) 398 Kb LPC: Ligand-Protein Contacts for 5GSE CSU: Contacts of Structural Units for 5GSE Structure Factors (1315 Kb) Retrieve 5GSE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GSE from S2C, [Save to disk] Re-refined 5gse structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GSE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GSE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gse_L] [5gse_C] [5gse_N] [5gse_P] [5gse] [5gse_F] [5gse_D] [5gse_A] [5gse_G] [5gse_O] [5gse_H] [5gse_M] [5gse_E] [5gse_J] [5gse_I] [5gse_K] [5gse_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5GSE

Community annotation for 5GSE at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---