5GSR	Immune System	date	Aug 17, 2016
title	Mouse Mhc Class I H-2kd With A Mers-Cov-Derived Peptide I5a
authors	K.Liu, Y.Chai, J.Qi, W.Tan, W.J.Liu, G.F.Gao
compound		source
Molecule: Beta-2-Microglobulin Chain: D, B Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: B2m, Cdabp0092, Hdcma22p Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: H-2 Class I Histocompatibility Antigen, K-D Alpha Chain: A, C Fragment: Unp Residues 22-295 Synonym: H-2k(D) Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: H2-K1, H2-K Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: 9-Mer Peptide From Spike Protein Chain: P, Q Fragment: Unp Residues 292-300 Engineered: Yes Mutation: Yes		Synthetic: Yes Organism_scientific: Middle East Respiratory Syndrome Coron Organism_taxid: 1335626
symmetry	Space Group: P 1 21 1	R_factor 0.201 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.353 79.658 122.706 90.00 90.30 90.00
method	X-Ray Diffraction	resolution	2.20 Å
Gene Ontology	Chain Function Process Component D, B
Primary reference	Protective T Cell Responses Featured by Concordant Recognition of Middle East Respiratory Syndrome Coronavirus-Derived CD8+ T Cell Epitopes and Host MHC., Liu WJ, Lan J, Liu K, Deng Y, Yao Y, Wu S, Chen H, Bao L, Zhang H, Zhao M, Wang Q, Han L, Chai Y, Qi J, Zhao J, Meng S, Qin C, Gao GF, Tan W, J Immunol. 2017 Jan 15;198(2):873-882. doi: 10.4049/jimmunol.1601542. Epub 2016, Nov 30. PMID:27903740

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk] Biological Unit Coordinates (5gsr.pdb1.gz) 69 Kb Biological Unit Coordinates (5gsr.pdb2.gz) 69 Kb CSU: Contacts of Structural Units for 5GSR Structure Factors (939 Kb) Retrieve 5GSR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GSR from S2C, [Save to disk] Re-refined 5gsr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5GSR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GSR

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gsr_C] [5gsr] [5gsr_A] [5gsr_B] [5gsr_Q] [5gsr_D] [5gsr_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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