5GTD Ligase date Aug 20, 2016
title O-Succinylbenzoate Coa Synthetase (Mene) From Bacillus Subti Complex With The Acyl-Adenylate Intermediate Osb-Amp
authors Y.Chen, Z.Guo
compound source
Molecule: 2-Succinylbenzoate--Coa Ligase
Chain: A, B
Synonym: O-Succinylbenzoyl-Coa Synthetase,Osb-Coa Synthetas
Ec: 6.2.1.26
Engineered: Yes
 Organism_scientific: Bacillus Subtilis (Strain 168)
Organism_taxid: 224308
Strain: 168
Gene: Mene, Bsu30790
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43
R_factor 0.200 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.814 121.814 98.563 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand A, CL, IMD, MG, OSB, PEG enzyme Ligase E.C.6.2.1.26 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMechanistic Insights from the Crystal Structure of Bacillus subtilis o-Succinylbenzoyl-CoA Synthetase Complexed with the Adenylate Intermediate., Chen Y, Jiang Y, Guo Z, Biochemistry. 2016 Dec 6;55(48):6685-6695. Epub 2016 Nov 28. PMID:27933791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]
  • Biological Unit Coordinates (5gtd.pdb1.gz) 281 Kb
  • LPC: Ligand-Protein Contacts for 5GTD
  • CSU: Contacts of Structural Units for 5GTD
  • Structure Factors (512 Kb)
  • Retrieve 5GTD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5GTD from S2C, [Save to disk]
  • Re-refined 5gtd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 5GTD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5gtd] [5gtd_B] [5gtd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5GTD
  • Community annotation for 5GTD at PDBWiki (http://pdbwiki.org)

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