5GZR	Virus	date	Oct 01, 2016
title	Zika Virus E Protein Complexed With A Neutralizing Antibody
authors	G.G.Gao, Y.Shi, R.Peng, S.Liu
compound		source
Molecule: Structural Protein E Chain: A, B, C		Organism_scientific: Zika Virus Organism_taxid: 64320 Strain: Isolate Zikv_smgc-1 Cell_line: Aedes Albopictus C636 Cells
Molecule: Strutural Protein M Chain: D, E, F		Organism_scientific: Zika Virus Organism_taxid: 64320 Strain: Zikv_smgc-1 Cell_line: Aedes Albopictus C636 Cells
Molecule: Z23 Fab Heavy Chain Chain: H, M Synonym: Igg Heavy Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcaggs
Molecule: Z23 Fab Light Chain Chain: L, N Synonym: Igg Light Chain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293t Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcaggs
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	9.40 Å
Gene Ontology	Chain Function Process Component A, C, B F, D, E
Primary reference	Molecular determinants of human neutralizing antibodies isolated from a patient infected with Zika virus., Wang Q, Yang H, Liu X, Dai L, Ma T, Qi J, Wong G, Peng R, Liu S, Li J, Li S, Song J, Liu J, He J, Yuan H, Xiong Y, Liao Y, Li J, Yang J, Tong Z, Griffin BD, Bi Y, Liang M, Xu X, Qin C, Cheng G, Zhang X, Wang P, Qiu X, Kobinger G, Shi Y, Yan J, Gao GF, Sci Transl Med. 2016 Dec 14;8(369):369ra179. PMID:27974667

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (5gzr.pdb1.gz) 3286 Kb CSU: Contacts of Structural Units for 5GZR Retrieve 5GZR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5GZR from S2C, [Save to disk]

View 5GZR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5GZR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5gzr_N] [5gzr_M] [5gzr_F] [5gzr_B] [5gzr_A] [5gzr_L] [5gzr_D] [5gzr] [5gzr_H] [5gzr_E] [5gzr_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5GZR: [IG_like] [IGv ] by SMART

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