5H24 Transferase Transferase Inhibitor date Oct 14, 2016
title Eed In Complex With Prc2 Allosteric Inhibitor Compound 8
authors K.Zhao, M.Zhao, X.Luo, H.Zhang
compound source
Molecule: Polycomb Protein Eed
Chain: A, B
Fragment: Unp Residues 76-441
Synonym: Heed,Wd Protein Associating With Integrin Cytoplas 1,Wait-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eed
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-Kg

Molecule: Histone-Lysine N-Methyltransferase Ezh2
Chain: C, D
Fragment: Unp Residues 40-68
Synonym: Enx-1,Enhancer Of Zeste Homolog 2,Lysine N-Methylt 6;
Ec: 2.1.1.43
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 2
R_factor 0.187 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.090 177.800 50.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand LQG enzyme Transferase E.C.2.1.1.43 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceDiscovery of First-in-Class, Potent and Orally Bioavailable EED inhibitor with Robust Anti-cancer Efficacy., Huang Y, Zhang J, Yu Z, Zhang H, Wang Y, Lingel A, Qi W, Gu XJ, Zhao K, Shultz MD, Wang L, Fu X, Sun Y, Zhang Q, Jiang X, Zhang JW, Zhang C, Li L, Zeng J, Feng L, Zhang C, Liu Y, Zhang M, Zhang L, Zhao M, Gao Z, Liu X, Fang D, Guo H, Mi Y, Gabriel T, Dillon MP, Atadja P, Oyang C, J Med Chem. 2017 Jan 16. doi: 10.1021/acs.jmedchem.6b01576. PMID:28092155
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (5h24.pdb1.gz) 67 Kb
  • Biological Unit Coordinates (5h24.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5H24
  • CSU: Contacts of Structural Units for 5H24
  • Structure Factors (649 Kb)
  • Retrieve 5H24 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H24 from S2C, [Save to disk]
  • Re-refined 5h24 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5H24 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5H24
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h24_A] [5h24] [5h24_C] [5h24_B] [5h24_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5H24
  • Community annotation for 5H24 at PDBWiki (http://pdbwiki.org)

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