5H88 Fluorescent Protein date Dec 23, 2015
title Crystal Structure Of Mrojoa Mutant - T16v -P63f - W143a - L1
authors A.T.Pandelieva, V.Tremblay, S.Sarvan, R.A.Chica, J.F.Couture
compound source
Molecule: Mrojoa Fluorescent Protein
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Discosoma Sp.
Organism_taxid: 86600
Gene: Pamcherry
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.380 94.710 78.941 90.00 98.50 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand CH6 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceBrighter Red Fluorescent Proteins by Rational Design of Triple-Decker Motif., Pandelieva AT, Baran MJ, Calderini GF, McCann JL, Tremblay V, Sarvan S, Davey JA, Couture JF, Chica RA, ACS Chem Biol. 2016 Jan 5. PMID:26697759
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (5h88.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (5h88.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (5h88.pdb3.gz) 40 Kb
  • Biological Unit Coordinates (5h88.pdb4.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 5H88
  • CSU: Contacts of Structural Units for 5H88
  • Structure Factors (1550 Kb)
  • Retrieve 5H88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5H88 from S2C, [Save to disk]
  • Re-refined 5h88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5H88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5H88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5h88_B] [5h88_A] [5h88_D] [5h88] [5h88_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5H88
  • Community annotation for 5H88 at PDBWiki (http://pdbwiki.org)

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