5HBH	Transferase	date	Dec 31, 2015
title	Cdk8-Cycc In Complex With 5-{5-Chloro-4-[1-(2-Methoxy-Ethyl) Diaza-Spiro[4.5]Dec-8-Yl]-Pyridin-3-Yl}-1-Methyl-1,3-Dihydr Benzo[C]Isothiazole 2,2-Dioxide
authors	D.Musil, J.Blagg, A.Mallinger
compound		source
Molecule: Cyclin-Dependent Kinase 8 Chain: A Fragment: Kinase Domain, Residues 1-362 Synonym: Cell Division Protein Kinase 8,Mediator Complex Su Cdk8,Mediator Of Rna Polymerase II Transcription Subunit Cd Kinase K35; Ec: 2.7.11.22,2.7.11.23 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk8 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Cyclin-C Chain: B Synonym: Srb11 Homolog,Hsrb11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccnc Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.234 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.143 70.663 169.467 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	5Y7, EDO, FMT	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A B cyclin-dependent protein ser...
Primary reference	Discovery of Potent, Selective, and Orally Bioavailable Small-Molecule Modulators of the Mediator Complex-Associated Kinases CDK8 and CDK19., Mallinger A, Schiemann K, Rink C, Stieber F, Calderini M, Crumpler S, Stubbs M, Adeniji-Popoola O, Poeschke O, Busch M, Czodrowski P, Musil D, Schwarz D, Ortiz-Ruiz MJ, Schneider R, Thai C, Valenti M, de Haven Brandon A, Burke R, Workman P, Dale T, Wienke D, Clarke PA, Esdar C, Raynaud FI, Eccles SA, Rohdich F, Blagg J, J Med Chem. 2016 Jan 21. PMID:26796641

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk] Biological Unit Coordinates (5hbh.pdb1.gz) 102 Kb LPC: Ligand-Protein Contacts for 5HBH CSU: Contacts of Structural Units for 5HBH Structure Factors (349 Kb) Retrieve 5HBH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HBH from S2C, [Save to disk] Re-refined 5hbh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HBH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HBH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hbh] [5hbh_A] [5hbh_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5HBH: [CYCLIN] [S_TKc ] by SMART

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