5HCZ Transferase Transferase Inhibitor date Jan 04, 2016
title Egfr Kinase Domain Mutant "Tmlr" With 3-Azetidinyl Azaindazo Compound 21
authors C.Eigenbrot, C.Yu
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A
Synonym: Proto-Oncogene C-Erbb-1,Receptor Tyrosine-Protein Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb, Erbb1, Her1
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: I 2 3
R_factor 0.194 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.449 146.449 146.449 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.62 Å
ligand 60E, SO4 enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of a Non-Covalent, Mutant-Selective Epidermal Growth Factor Receptor Inhibitor., Chan BK, Hanan EJ, Bowman K, Bryan MC, Burdick DJ, Chan EW, Chen Y, Clausen S, Dela Vega T, Dotson J, Eigenbrot C, Elliott RL, Heald RA, Jackson PS, Knight JD, La H, Lainchbury MD, Malek S, Purkey HE, Schaefer G, Schmidt S, Seward EM, Sideris S, Shao L, Wang S, Yeap KS, Yen I, Yu C, Heffron TP, J Med Chem. 2016 Aug 26. PMID:27564586
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (110 Kb) [Save to disk]
  • Biological Unit Coordinates (5hcz.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 5HCZ
  • CSU: Contacts of Structural Units for 5HCZ
  • Structure Factors (431 Kb)
  • Retrieve 5HCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HCZ from S2C, [Save to disk]
  • Re-refined 5hcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HCZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hcz] [5hcz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HCZ: [TyrKc ] by SMART
    • Other resources with information on 5HCZ
  • Community annotation for 5HCZ at PDBWiki (http://pdbwiki.org)

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