5HD5 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 60F enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceFemtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein., Pande K, Hutchison CD, Groenhof G, Aquila A, Robinson JS, Tenboer J, Basu S, Boutet S, DePonte DP, Liang M, White TA, Zatsepin NA, Yefanov O, Morozov D, Oberthuer D, Gati C, Subramanian G, James D, Zhao Y, Koralek J, Brayshaw J, Kupitz C, Conrad C, Roy-Chowdhury S, Coe JD, Metz M, Xavier PL, Grant TD, Koglin JE, Ketawala G, Fromme R, Srajer V, Henning R, Spence JC, Ourmazd A, Schwander P, Weierstall U, Frank M, Fromme P, Barty A, Chapman HN, Moffat K, van Thor JJ, Schmidt M, Science. 2016 May 6;352(6286):725-9. doi: 10.1126/science.aad5081. Epub 2016 May , 5. PMID:27151871
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (5hd5.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5HD5
  • CSU: Contacts of Structural Units for 5HD5
  • Structure Factors (303 Kb)
  • Retrieve 5HD5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HD5 from S2C, [Save to disk]
  • Re-refined 5hd5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HD5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hd5] [5hd5_A]
  • SWISS-PROT database:
  • Domain found in 5HD5: [PAS ] by SMART

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022,2024
    Bioinformatics Unit
    Weizmann Institute of Science