5HDB date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A, C


B, D


Primary referencebeta-subunit Binding is Sufficient for Ligands to open the Integrin alphaIIbbeta3 Headpiece., Lin FY, Zhu J, Eng ET, Hudson NE, Springer TA, J Biol Chem. 2015 Dec 2. pii: jbc.M115.705624. PMID:26631735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1315 Kb) [Save to disk]
  • Biological Unit Coordinates (5hdb.pdb1.gz) 454 Kb
  • Biological Unit Coordinates (5hdb.pdb2.gz) 452 Kb
  • Biological Unit Coordinates (5hdb.pdb3.gz) 209 Kb
  • Biological Unit Coordinates (5hdb.pdb4.gz) 210 Kb
  • CSU: Contacts of Structural Units for 5HDB
  • Structure Factors (711 Kb)
  • Retrieve 5HDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HDB from S2C, [Save to disk]
  • Re-refined 5hdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hdb] [5hdb_A] [5hdb_B] [5hdb_C] [5hdb_D] [5hdb_E] [5hdb_F] [5hdb_H] [5hdb_L]
  • SWISS-PROT database:
  • Domains found in 5HDB: [IG_like] [IGv] [INB] [Int_alpha] [PSI] [VWA ] by SMART

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