5HDU	Hydrolase Hydrolase Inhibitor	date	Jan 05, 2016
title	Bace-1 Incomplex With (7ar)-7a-(4-(3-Cyanophenyl)Thiophen-2- Fluoro-4-Methoxypyrimidin-2-Yl)-3-Methyl-4-Oxooctahydro-2h- 4-D]Pyrimidin-2-Iminium
authors	P.Orth
compound		source
Molecule: Beta-Secretase 1 Chain: A, B Fragment: Unp Residues 41-454 Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.214
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.410 89.450 131.240 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.58 Å
ligand	60W, TLA	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (5hdu.pdb1.gz) 73 Kb Biological Unit Coordinates (5hdu.pdb2.gz) 73 Kb LPC: Ligand-Protein Contacts for 5HDU CSU: Contacts of Structural Units for 5HDU Structure Factors (3891 Kb) Retrieve 5HDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5HDU from S2C, [Save to disk] Re-refined 5hdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HDU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5HDU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hdu_B] [5hdu_A] [5hdu] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5HDU

Community annotation for 5HDU at PDBWiki (http://pdbwiki.org)

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