5HFL Viral Protein date Jan 07, 2016
title Gp41-Targeting Hiv-1 Fusion Inhibitors With Helical Ile-Asp-
authors Y.Zhu, S.Ye, R.Zhang
compound source
Molecule: Envelope Glycoprotein,Gp41 Chr Region
Chain: A, B, C, D, E, F
Fragment: Unp Residues 35-70
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Env
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.449 114.471 42.936 90.00 91.80 90.00
method X-Ray Diffractionresolution 2.29 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5hfl.pdb1.gz) 36 Kb
  • Biological Unit Coordinates (5hfl.pdb2.gz) 35 Kb
  • CSU: Contacts of Structural Units for 5HFL
  • Structure Factors (362 Kb)
  • Retrieve 5HFL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HFL from S2C, [Save to disk]
  • Re-refined 5hfl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HFL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HFL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hfl_C] [5hfl_A] [5hfl_D] [5hfl_B] [5hfl_F] [5hfl_E] [5hfl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HFL
  • Community annotation for 5HFL at PDBWiki (http://pdbwiki.org)

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