5HI8 Lyase date Jan 11, 2016
title Structure Of T-Type Phycobiliprotein Lyase Cpet From Prochlo Phage P-Hm1
authors R.Gasper, J.Schwach, N.Frankenberg-Dinkel, E.Hofmann
compound source
Molecule: Antenna Protein
Chain: A, B
Synonym: Cpet
Engineered: Yes
Organism_scientific: Prochlorococcus Phage P-Hm1
Organism_taxid: 445700
Gene: Cpet, Phm1_028
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pask-Iba45plus
symmetry Space Group: C 1 2 1
R_factor 0.207 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.290 61.680 93.340 90.00 109.77 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ACT, MG enzyme
Gene PHM1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAuxiliary metabolic genes- Distinct Features of Cyanophage-encoded T-type Phycobiliprotein Lyase thetaCpeT., Gasper R, Schwach J, Hartmann J, Holtkamp A, Wiethaus J, Riedel N, Hofmann E, Frankenberg-Dinkel N, J Biol Chem. 2017 Jan 10. pii: jbc.M116.769703. doi: 10.1074/jbc.M116.769703. PMID:28073912
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5hi8.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 5HI8
  • CSU: Contacts of Structural Units for 5HI8
  • Structure Factors (481 Kb)
  • Retrieve 5HI8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HI8 from S2C, [Save to disk]
  • Re-refined 5hi8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HI8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HI8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hi8_B] [5hi8] [5hi8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HI8
  • Community annotation for 5HI8 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science