5HOR Transferase date Jan 19, 2016
title Crystal Structure Of C-Met-M1250t In Complex With Sar125844.
authors F.Vallee, J.Houtmann, J.P.Marquette
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Synonym: Hgf Receptor,Hgfsf Receptor,Proto-Oncogene C-Met, Factor Receptor,Sf Receptor,Tyrosine-Protein Kinase Met;
Ec: 2.7.10.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Met
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.020 46.990 156.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand 63K enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and Pharmacokinetic and Pharmacological Properties of the Potent and Selective MET Kinase Inhibitor 1-{6-[6-(4-Fluorophenyl)-[1,2,4]triazolo[4,3-b]pyridazin-3-ylsulfanyl]benzothiazo l-2-yl}-3-(2-morpholin-4-ylethyl)urea (SAR125844)., Ugolini A, Kenigsberg M, Rak A, Vallee F, Houtmann J, Lowinski M, Capdevila C, Khider J, Albert E, Martinet N, Nemecek C, Grapinet S, Bacque E, Roesner M, Delaisi C, Calvet L, Bonche F, Semiond D, Egile C, Goulaouic H, Schio L, J Med Chem. 2016 Aug 11;59(15):7066-74. doi: 10.1021/acs.jmedchem.6b00280. Epub, 2016 Jul 13. PMID:27355974
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5hor.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5HOR
  • CSU: Contacts of Structural Units for 5HOR
  • Structure Factors (449 Kb)
  • Retrieve 5HOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HOR from S2C, [Save to disk]
  • Re-refined 5hor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HOR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hor_A] [5hor]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HOR: [TyrKc ] by SMART
  • Other resources with information on 5HOR
  • Community annotation for 5HOR at PDBWiki (http://pdbwiki.org)

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