5HPU Hormone date Jan 21, 2016
title Insulin With Proline Analog Hyp At Position B28 In The R6 St
authors S.A.Lieblich, K.Y.Fang, J.K.B.Cahn, D.A.Tirrell
compound source
Molecule: Insulin, Chain A
Chain: A, C
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cag18515
Expression_system_plasmid: Pqe80l

Molecule: Insulin, Chain B
Chain: B, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ins
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Cag18515
Expression_system_plasmid: Pqe80l
symmetry Space Group: H 3
R_factor 0.158 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.757 77.757 40.397 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand CL, HYP, IPH, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary reference4S-Hydroxylation of Insulin at ProB28 Accelerates Hexamer Dissociation and Delays Fibrillation., Lieblich SA, Fang KY, Cahn JKB, Rawson J, LeBon J, Ku HT, Tirrell DA, J Am Chem Soc. 2017 Jun 28;139(25):8384-8387. doi: 10.1021/jacs.7b00794. Epub, 2017 Jun 20. PMID:28598606
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (5hpu.pdb1.gz) 98 Kb
  • LPC: Ligand-Protein Contacts for 5HPU
  • CSU: Contacts of Structural Units for 5HPU
  • Structure Factors (385 Kb)
  • Retrieve 5HPU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HPU from S2C, [Save to disk]
  • Re-refined 5hpu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HPU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HPU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hpu] [5hpu_C] [5hpu_A] [5hpu_D] [5hpu_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5HPU
  • Community annotation for 5HPU at PDBWiki (http://pdbwiki.org)

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