5HR6 Transferase Rna date Jan 22, 2016
title X-Ray Crystal Structure Of C118a Rlmn With Cross-Linked Trna From Escherichia Coli
authors E.L.Schwalm, T.L.Grove, S.J.Booker, A.K.Boal
compound source
Molecule: Rlmn Methylase
Chain: A, B
Synonym: 23s Rrna (Adenine(2503)-C(2))-Methyltransferase,23 M2a2503 Methyltransferase,Ribosomal Rna Large Subunit Methyltransferase N,Trna (Adenine(37)-C(2))-Methyltransfera M2a37 Methyltransferase;
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Trna Glu
Chain: C, D

Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.664 69.821 149.298 90.00 90.30 90.00
method X-Ray Diffractionresolution 2.88 Å
ligand 5AD, MET, MG, SF4, SMC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (361 Kb) [Save to disk]
  • Biological Unit Coordinates (5hr6.pdb1.gz) 179 Kb
  • Biological Unit Coordinates (5hr6.pdb2.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 5HR6
  • CSU: Contacts of Structural Units for 5HR6
  • Structure Factors (892 Kb)
  • Retrieve 5HR6 in mmCIF format [Save to disk]
  • Re-refined 5hr6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HR6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HR6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hr6_B] [5hr6_D] [5hr6] [5hr6_C] [5hr6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HR6: [Elp3 ] by SMART
  • Other resources with information on 5HR6
  • Community annotation for 5HR6 at PDBWiki (http://pdbwiki.org)

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