5HTZ Hydrolase Hydrolase Inhibitor date Jan 27, 2016
title Bace1 In Complex With (S)-5-(3-Chloro-5-(5-(Prop-1-Yn-1-Yl)P Yl)Thiophen-2-Yl)-2,5-Dimethyl-1,2,4-Thiadiazinan-3-Iminium Dioxide
authors P.Orth
compound source
Molecule: Beta-Secretase 1
Chain: A, B
Fragment: Unp Residues 43-454
Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.353 89.978 131.636 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand 66J enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDiscovery of the 3-Imino-1,2,4-thiadiazinane 1,1-Dioxide Derivative Verubecestat (MK-8931)-A beta-Site Amyloid Precursor Protein Cleaving Enzyme 1 Inhibitor for the Treatment of Alzheimer's Disease., Scott JD, Li SW, Brunskill AP, Chen X, Cox K, Cumming JN, Forman M, Gilbert EJ, Hodgson RA, Hyde LA, Jiang Q, Iserloh U, Kazakevich I, Kuvelkar R, Mei H, Meredith J, Misiaszek J, Orth P, Rossiter LM, Slater M, Stone J, Strickland CO, Voigt JH, Wang G, Wang H, Wu Y, Greenlee WJ, Parker EM, Kennedy ME, Stamford AW, J Med Chem. 2016 Dec 8;59(23):10435-10450. Epub 2016 Nov 18. PMID:27933948
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (5htz.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (5htz.pdb2.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 5HTZ
  • CSU: Contacts of Structural Units for 5HTZ
  • Structure Factors (2065 Kb)
  • Retrieve 5HTZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HTZ from S2C, [Save to disk]
  • Re-refined 5htz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HTZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HTZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5htz_A] [5htz] [5htz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5HTZ
  • Community annotation for 5HTZ at PDBWiki (http://pdbwiki.org)

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