5HUY Transport Protein Viral Protein date Jan 28, 2016
title Structure Of Hcmv Small Terminase Nls Bound To Importin Alph
authors R.S.Sankhala, R.K.Lokareddy, G.Cingolani
compound source
Molecule: Importin Subunit Alpha-1
Chain: C
Synonym: Importin Alpha P1,Karyopherin Subunit Alpha-2,Pend Targeting Complex 58 Kda Subunit,Ptac58,Rag Cohort Protein Alpha;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Kpna2, Rch1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Hcmv Small Terminase
Chain: B, A
Engineered: Yes

Organism_scientific: Human Herpesvirus 5 Strain Toledo
Organism_taxid: 311339
Expression_system: Synthetic Construct
Expression_system_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.254 90.810 96.934 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.98 Å
Gene
Ontology
ChainFunctionProcessComponent
C
  • entry of viral genome into h...

  • Primary referenceDivergent Evolution of Nuclear Localization Signal Sequences in Herpesvirus Terminase Subunits., Sankhala RS, Lokareddy RK, Cingolani G, J Biol Chem. 2016 Mar 31. pii: jbc.M116.724393. PMID:27033706
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (5huy.pdb1.gz) 142 Kb
  • CSU: Contacts of Structural Units for 5HUY
  • Structure Factors (762 Kb)
  • Retrieve 5HUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HUY from S2C, [Save to disk]
  • Re-refined 5huy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5HUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5HUY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5huy_C] [5huy] [5huy_A] [5huy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HUY: [ARM ] by SMART
  • Other resources with information on 5HUY
  • Community annotation for 5HUY at PDBWiki (http://pdbwiki.org)

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