5HV4 Oxidoreductase date Jan 28, 2016
title Crystal Structure Of A Prolyl 4-Hydroxylase Complexed With A Ketoglutarate From The Pathogenic Bacterium Bacillus Anthra C2221
authors N.J.Schnicker, M.Dey
compound source
Molecule: 2og-Fe(II) Oxygenase
Chain: A
Synonym: 2og-Fe(II) Oxygenase Superfamily Protein,Prolyl 4- Hydroxylase,Alpha Subunit Domain Protein;
Engineered: Yes
 Organism_scientific: Bacillus Anthracis
Organism_taxid: 1392
Gene: Gbaa_4459, Ab163_21210, Ab164_16730, Ab165_11640, Ab1 Ab167_21505, Ab168_05660, Ab169_05325, Ab170_09560, Ab171_1 Ab893_21665, Adk17_22720, Adk18_21540, Adt20_05380, Adt21_1 Bf27_3254;
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.199 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.551 146.189 75.075 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand AKG, CD, K enzyme
Gene AB163 ; AB164 ; AB165 ; AB166 ; AB167 ; AB168 ; AB169 ; AB170 ; AB171 ; AB893 ; ADK17 ; ADK18 ; ADT20 ; ADT21 ; BF27 ; GBAA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (5hv4.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 5HV4
  • CSU: Contacts of Structural Units for 5HV4
  • Structure Factors (675 Kb)
  • Retrieve 5HV4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5HV4 from S2C, [Save to disk]
  • Re-refined 5hv4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5HV4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5HV4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5hv4] [5hv4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5HV4: [P4Hc ] by SMART
    • Other resources with information on 5HV4
  • Community annotation for 5HV4 at PDBWiki (http://pdbwiki.org)

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