OCA Atlas for 5HXY

5HXY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, PO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, E, A, D, F, B

Primary reference

Crystal structure of Thermoplasma acidophilum XerA recombinase shows large C-shape clamp conformation and cis-cleavage mode for nucleophilic tyrosine., Jo CH, Kim J, Han AR, Park SY, Hwang KY, Nam KH, FEBS Lett. 2016 Mar;590(6):848-56. doi: 10.1002/1873-3468.12109. Epub 2016 Mar 4. PMID:26919387

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (288 Kb) [Save to disk]

Biological Unit Coordinates (5hxy.pdb1.gz) 50 Kb

Biological Unit Coordinates (5hxy.pdb2.gz) 50 Kb

Biological Unit Coordinates (5hxy.pdb3.gz) 51 Kb

Biological Unit Coordinates (5hxy.pdb4.gz) 49 Kb

Biological Unit Coordinates (5hxy.pdb5.gz) 51 Kb

Biological Unit Coordinates (5hxy.pdb6.gz) 48 Kb

LPC: Ligand-Protein Contacts for 5HXY

CSU: Contacts of Structural Units for 5HXY

Structure Factors (1748 Kb)

Retrieve 5HXY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5HXY from S2C, [Save to disk]

Re-refined 5hxy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5HXY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5hxy] [5hxy_A] [5hxy_B] [5hxy_C] [5hxy_D] [5hxy_E] [5hxy_F]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]