5I3W	Hydrolase Hydrolase Inhibitor	date	Feb 11, 2016
title	Crystal Structure Of Bace1 In Complex With 2-Aminooxazoline- Azaxanthene Inhibitor 2
authors	D.A.Whittington, A.M.Long
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Unp Residues 43-453 Synonym: Aspartyl Protease 2,Asp 2,Beta-Site Amyloid Precur Protein Cleaving Enzyme 1,Beta-Site App Cleaving Enzyme 1,M Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace, Kiaa1149 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.180 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.660 101.660 172.357 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	68L, GOL, IOD, SO4	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Fragment-Linking Approach Using (19)F NMR Spectroscopy To Obtain Highly Potent and Selective Inhibitors of beta-Secretase., Jordan JB, Whittington DA, Bartberger MD, Sickmier EA, Chen K, Cheng Y, Judd T, J Med Chem. 2016 Apr 28;59(8):3732-49. doi: 10.1021/acs.jmedchem.5b01917. Epub, 2016 Apr 6. PMID:26978477

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (5i3w.pdb1.gz) 68 Kb LPC: Ligand-Protein Contacts for 5I3W CSU: Contacts of Structural Units for 5I3W Structure Factors (604 Kb) Retrieve 5I3W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5I3W from S2C, [Save to disk] Re-refined 5i3w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5I3W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5I3W

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5i3w_A] [5i3w] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5I3W

Community annotation for 5I3W at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---