5I4V Dna Binding Protein date Feb 12, 2016
title Discovery Of Novel, Orally Efficacious Liver X Receptor (Lxr Agonists
authors G.Chen, B.M.Mckeever
compound source
Molecule: Oxysterols Receptor Lxr-Beta,Nuclear Receptor Coa 2;
Chain: A, E
Synonym: Liver X Receptor Beta,Nuclear Receptor Ner,Nuclear Subfamily 1 Group H Member 2,Ubiquitously-Expressed Nuclear Ncoa-2,Class E Basic Helix-Loop-Helix Protein 75,Bhlhe75, Transcriptional Intermediary Factor 2,Htif2;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1h2, Lxrb, Ner, Unr, Ncoa2, Bhlhe75, Src2, Tif2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a(+)

Molecule: Retinoic Acid Receptor Rxr-Beta,Nuclear Receptor Coactivator 2;
Chain: B, F
Synonym: Nuclear Receptor Subfamily 2 Group B Member 2,Reti Receptor Beta,Ncoa-2,Class E Basic Helix-Loop-Helix Protein Bhlhe75,Transcriptional Intermediary Factor 2,Htif2;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rxrb, Nr2b2, Ncoa2, Bhlhe75, Src2, Tif2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.637 101.221 143.274 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.61 Å
ligand 67S enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (5i4v.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (5i4v.pdb2.gz) 76 Kb
  • LPC: Ligand-Protein Contacts for 5I4V
  • CSU: Contacts of Structural Units for 5I4V
  • Structure Factors (650 Kb)
  • Retrieve 5I4V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5I4V from S2C, [Save to disk]
  • Re-refined 5i4v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5I4V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5I4V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5i4v_F] [5i4v_A] [5i4v] [5i4v_B] [5i4v_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5I4V: [HOLI ] by SMART
  • Other resources with information on 5I4V
  • Community annotation for 5I4V at PDBWiki (http://pdbwiki.org)

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