5IDN	Transferase	date	Feb 24, 2016
title	Cdk8-Cycc In Complex With [(S)-2-(4-Chloro-Phenyl)-Pyrrolidi (3-Methyl-1h-Pyrazolo[3,4-B]Pyridin-5-Yl)-Methanone
authors	D.Musil, J.Blagg, A.Mallinger, P.Czodrowski, K.Schiemann
compound		source
Molecule: Cyclin-Dependent Kinase 8 Chain: A Fragment: Kinase Domain, Residues 3-405 Synonym: Cell Division Protein Kinase 8,Mediator Complex Su Cdk8,Mediator Of Rna Polymerase II Transcription Subunit Cd Kinase K35; Ec: 2.7.11.22,2.7.11.23 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk8 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Cyclin-C Chain: B Synonym: Srb11 Homolog,Hsrb11 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ccnc Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 70.460 73.467 168.020 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.26 Å
ligand	6A7, EDO, FMT	enzyme	Transferase E.C.2.7.11.22 BRENDA
Gene Ontology	Chain Function Process Component A B cyclin-dependent protein ser...
Primary reference	Structure-Based Optimization of Potent, Selective, and Orally Bioavailable CDK8 Inhibitors Discovered by High-Throughput Screening., Czodrowski P, Mallinger A, Wienke D, Esdar C, Poschke O, Busch M, Rohdich F, Eccles SA, Ortiz-Ruiz MJ, Schneider R, Raynaud FI, Clarke PA, Musil D, Schwarz D, Dale T, Urbahns K, Blagg J, Schiemann K, J Med Chem. 2016 Oct 27;59(20):9337-9349. Epub 2016 Oct 7. PMID:27490956

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (5idn.pdb1.gz) 107 Kb LPC: Ligand-Protein Contacts for 5IDN CSU: Contacts of Structural Units for 5IDN Structure Factors (359 Kb) Retrieve 5IDN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IDN from S2C, [Save to disk] Re-refined 5idn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IDN in 3D

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Visual 3D analysis of 5IDN

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5idn_A] [5idn_B] [5idn] SWISS-PROT database: Domain organization of by SWISSPFAM

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Community annotation for 5IDN at PDBWiki (http://pdbwiki.org)

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