5IFI Ligase date Feb 26, 2016
title Crystal Structure Of Acetyl-Coa Synthetase In Complex With A 5'-Propylphosphate From Cryptococcus Neoformans H99
authors Seattle Structural Genomics Center For Infectious Disease (S Ssgcid, D.Fox Iii, T.E.Edwards, D.D.Lorimer, M.W.Mutz
compound source
Molecule: Acetyl-Coenzyme A Synthetase
Chain: A, B, C
Ec: 6.2.1.1
Engineered: Yes
Organism_scientific: Cryptococcus Neoformans Var. Grubii Se (Strain H99 Atcc 208821 Cbs 10515 Fgsc 9487);
Organism_taxid: 235443
Strain: H99 Atcc 208821 Cbs 10515 Fgsc 9487
Atcc: 208821
Gene: Cnag_00797
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pemb7013
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.460 185.550 84.890 90.00 93.67 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand EDO, PO4, PRX enzyme Ligase E.C.6.2.1.1 BRENDA
Gene CNAG
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (616 Kb) [Save to disk]
  • Biological Unit Coordinates (5ifi.pdb1.gz) 218 Kb
  • Biological Unit Coordinates (5ifi.pdb2.gz) 217 Kb
  • Biological Unit Coordinates (5ifi.pdb3.gz) 182 Kb
  • LPC: Ligand-Protein Contacts for 5IFI
  • CSU: Contacts of Structural Units for 5IFI
  • Structure Factors (3121 Kb)
  • Retrieve 5IFI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IFI from S2C, [Save to disk]
  • Re-refined 5ifi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IFI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IFI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ifi_B] [5ifi] [5ifi_A] [5ifi_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IFI
  • Community annotation for 5IFI at PDBWiki (http://pdbwiki.org)

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