5IGV Macrolide 2'-phosphotransferase type II - complex with GDP and azithromycin date
authors Berghuis, A.M., Fong, D.H.
compound source
R_Free 0.209
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand CA, GDP, MG, ZIT enzyme
Gene PO103

Primary referenceStructural Basis for Kinase-Mediated Macrolide Antibiotic Resistance., Fong DH, Burk DL, Blanchet J, Yan AY, Berghuis AM, Structure. 2017 May 2;25(5):750-761.e5. doi: 10.1016/j.str.2017.03.007. Epub 2017, Apr 13. PMID:28416110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5igv.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 5IGV
  • CSU: Contacts of Structural Units for 5IGV
  • Structure Factors (401 Kb)
  • Retrieve 5IGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IGV from S2C, [Save to disk]
  • Re-refined 5igv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IGV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5igv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5igv] [5igv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IGV
  • Community annotation for 5IGV at PDBWiki (http://pdbwiki.org)

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