5IGV Transferase date Feb 28, 2016
title Macrolide 2'-Phosphotransferase Type II - Complex With Gdp A Azithromycin
authors A.M.Berghuis, D.H.Fong
compound source
Molecule: Macrolide 2'-Phosphotransferase II
Chain: A
Synonym: Macrolide 2'-Phosphotransferase II Protein Mphb,Ma Phosphotransferase,Mph(B);
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Mphb, Po103_99
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.209
length a length b length c angle alpha angle beta angle gamma
40.230 80.450 96.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.55 Å
ligand CA, GDP, MG, ZIT enzyme
Gene PO103

Primary referenceStructural Basis for Kinase-Mediated Macrolide Antibiotic Resistance., Fong DH, Burk DL, Blanchet J, Yan AY, Berghuis AM, Structure. 2017 May 2;25(5):750-761.e5. doi: 10.1016/j.str.2017.03.007. Epub 2017, Apr 13. PMID:28416110
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (5igv.pdb1.gz) 166 Kb
  • LPC: Ligand-Protein Contacts for 5IGV
  • CSU: Contacts of Structural Units for 5IGV
  • Structure Factors (401 Kb)
  • Retrieve 5IGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IGV from S2C, [Save to disk]
  • Re-refined 5igv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IGV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5igv] [5igv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IGV
  • Community annotation for 5IGV at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science