5IGY	Transferase	date	Feb 28, 2016
title	Macrolide 2'-Phosphotransferase Type II - Complex With Gdp A Erythromycin
authors	A.M.Berghuis, D.H.Fong
compound		source
Molecule: Macrolide 2'-Phosphotransferase II Chain: A Synonym: Macrolide 2'-Phosphotransferase II Protein Mphb,Ma Phosphotransferase,Mph(B); Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Strain: Bm2506 Gene: Mphb, Po103_99 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 21 21 21	R_factor 0.170 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 39.870 80.520 97.870 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	CA, ERY, GDP	enzyme
Gene	PO103
Gene Ontology	Chain Function Process Component A
Primary reference	Structural Basis for Kinase-Mediated Macrolide Antibiotic Resistance., Fong DH, Burk DL, Blanchet J, Yan AY, Berghuis AM, Structure. 2017 May 2;25(5):750-761.e5. doi: 10.1016/j.str.2017.03.007. Epub 2017, Apr 13. PMID:28416110

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk] Biological Unit Coordinates (5igy.pdb1.gz) 157 Kb LPC: Ligand-Protein Contacts for 5IGY CSU: Contacts of Structural Units for 5IGY Structure Factors (495 Kb) Retrieve 5IGY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IGY from S2C, [Save to disk] Re-refined 5igy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IGY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IGY

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5igy] [5igy_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5IGY

Community annotation for 5IGY at PDBWiki (http://pdbwiki.org)

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