5IRE Virus date Mar 13, 2016
title The Cryo-Em Structure Of Zika Virus
authors D.Sirohi, Z.Chen, L.Sun, T.Klose, T.Pierson, M.Rossmann, R.Kuhn
compound source
Molecule: E Protein
Chain: A, C, E
Synonym: Capsid E Protein
 Organism_scientific: Zika Virus
Organism_taxid: 64320

Molecule: M Protein
Chain: B, D, F
Fragment: Unp Residues 179-253
Organism_scientific: Zika Virus
Organism_taxid: 64320
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


F, D, B


Primary referenceThe 3.8 A resolution cryo-EM structure of Zika virus., Sirohi D, Chen Z, Sun L, Klose T, Pierson TC, Rossmann MG, Kuhn RJ, Science. 2016 Apr 22;352(6284):467-70. doi: 10.1126/science.aaf5316. Epub 2016, Mar 31. PMID:27033547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (5ire.pdb1.gz) 13082 Kb
  • LPC: Ligand-Protein Contacts for 5IRE
  • CSU: Contacts of Structural Units for 5IRE
  • Retrieve 5IRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IRE from S2C, [Save to disk]
    • View 5IRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5IRE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ire] [5ire_E] [5ire_B] [5ire_C] [5ire_D] [5ire_F] [5ire_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5IRE
  • Community annotation for 5IRE at PDBWiki (http://pdbwiki.org)

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