OCA Atlas for 5IT9

5IT9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A
B
C
D
E
F
G
H
I
J
K
L
M
N
O
P
Q
R
S
T
U
V
W
X
Y
a
b
c
d
e
f
g	GDP-dissociation inhibitor a...

Primary reference

Structural characterization of ribosome recruitment and translocation by type IV IRES., Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS, Elife. 2016 May 9;5. pii: e13567. doi: 10.7554/eLife.13567. PMID:27159451

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1570 Kb) [Save to disk]

Biological Unit Coordinates (5it9.pdb1.gz) 1560 Kb

LPC: Ligand-Protein Contacts for 5IT9

CSU: Contacts of Structural Units for 5IT9

Retrieve 5IT9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5IT9 from S2C, [Save to disk]

View 5IT9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5it9_J] [5it9] [5it9_2] [5it9_A] [5it9_B] [5it9_C] [5it9_D] [5it9_E] [5it9_F] [5it9_G] [5it9_H] [5it9_I] [5it9_K] [5it9_L] [5it9_M] [5it9_N] [5it9_O] [5it9_P] [5it9_Q] [5it9_R] [5it9_S] [5it9_T] [5it9_U] [5it9_V] [5it9_W] [5it9_X] [5it9_Y] [5it9_Z] [5it9_a] [5it9_b] [5it9_c] [5it9_d] [5it9_e] [5it9_f] [5it9_g] [5it9_i]

SWISS-PROT database:

Domains found in 5IT9: [KH] [KOW] [Ribosomal_S10] [Ribosomal_S13_N] [Ribosomal_S15] [Ribosomal_S19e] [Ribosomal_S27] [Ribosomal_S3Ae] [Ribosomal_S4] [Ribosomal_S6e] [S4] [WD40 ] by SMART

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