5ITU Dna Binding Protein Dna date Mar 17, 2016
title Crystal Structure Of Human Neil1(242k) Bound To Duplex Dna C Thf
authors C.Zhu, L.Lu, J.Zhang, Z.Yue, J.Song, S.Zong, M.Liu, O.Stovicek, Y.Ga
compound source
Molecule: Endonuclease 8-Like 1
Chain: A, B, C
Synonym: Dna Glycosylaseap Lyase Neil1,Dna-(Apurinic Or Ap Site) Lyase Neil1,Endonuclease Viii-Like 1,Fpg1,Nei Homolog Nei-Like Protein 1;
Ec: 3.2.2.-,4.2.99.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Neil1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dna (5'-D(Cpgptpcpcpapcpgptpcptpapc)
Chain: D, F, H
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644

Molecule: Dna (5'-D(Tpapgpapcpcptpgpgpapcpgpg)
Chain: E, G, I
Engineered: Yes

Synthetic: Yes
Organism_scientific: Unidentified
Organism_taxid: 32644
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.701 109.290 171.881 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.41 Å
ligand
enzyme Hydrolase E.C.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5itu.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (5itu.pdb2.gz) 53 Kb
  • Biological Unit Coordinates (5itu.pdb3.gz) 54 Kb
  • CSU: Contacts of Structural Units for 5ITU
  • Structure Factors (1151 Kb)
  • Retrieve 5ITU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ITU from S2C, [Save to disk]
  • Re-refined 5itu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5ITU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ITU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5itu_C] [5itu_H] [5itu_A] [5itu_D] [5itu_B] [5itu_F] [5itu_G] [5itu] [5itu_E] [5itu_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5ITU: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 5ITU
  • Community annotation for 5ITU at PDBWiki (http://pdbwiki.org)

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