5IU8 Membrane Protein date Mar 17, 2016
title Crystal Structure Of Stabilized A2a Adenosine Receptor A2ar- In Complex With Compound 12f At 2.0a Resolution
authors E.Segala, D.Guo, R.K.Y.Cheng, A.Bortolato, F.Deflorian, A.S.Dore, J.C.Errey, L.H.Heitman, A.P.Ijzerman, F.H.Marshall, R.M.Cooke
compound source
Molecule: Adenosine Receptor A2a,Soluble Cytochrome B562,Ad Receptor A2a;
Chain: A
Synonym: Cytochrome B-562
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Adora2a, Adora2, Cybc
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Tni Pro
Expression_system_vector_type: Bacmid
Expression_system_plasmid: Pfast-Bac
symmetry Space Group: C 2 2 21
R_factor 0.181 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.312 179.537 139.994 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 6DZ, CLR, HTO, NA, OLA, OLB, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceControlling the Dissociation of Ligands from the Adenosine A2A Receptor through Modulation of Salt Bridge Strength., Segala E, Guo D, Cheng RK, Bortolato A, Deflorian F, Dore AS, Errey JC, Heitman LH, IJzerman AP, Marshall FH, Cooke RM, J Med Chem. 2016 Jul 1. PMID:27312113
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (5iu8.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5IU8
  • CSU: Contacts of Structural Units for 5IU8
  • Structure Factors (719 Kb)
  • Retrieve 5IU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IU8 from S2C, [Save to disk]
  • Re-refined 5iu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IU8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iu8] [5iu8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IU8
  • Community annotation for 5IU8 at PDBWiki (http://pdbwiki.org)

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