5IVI Hydrolase date Mar 20, 2016
title The Alpha-Esterase-7 Carboxylesterase, E3, From The Blowfly Cuprina: Phosphorylated Enzyme Qfit Multi-Conformer Model
authors G.J.Correy, C.J.Jackson
compound source
Molecule: Carboxylic Ester Hydrolase
Chain: A
Ec: 3.1.1.-
Engineered: Yes
Organism_scientific: Lucilia Cuprina
Organism_common: Green Bottle Fly
Organism_taxid: 7375
Gene: Lcae7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.816 101.254 225.818 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.53 Å
ligand DPF enzyme Hydrolase E.C.3.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMapping the Accessible Conformational Landscape of an Insect Carboxylesterase Using Conformational Ensemble Analysis and Kinetic Crystallography., Correy GJ, Carr PD, Meirelles T, Mabbitt PD, Fraser NJ, Weik M, Jackson CJ, Structure. 2016 Jun 7;24(6):977-87. doi: 10.1016/j.str.2016.04.009. Epub 2016 May, 19. PMID:27210287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (5ivi.pdb1.gz) 145 Kb
  • LPC: Ligand-Protein Contacts for 5IVI
  • CSU: Contacts of Structural Units for 5IVI
  • Structure Factors (1891 Kb)
  • Retrieve 5IVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IVI from S2C, [Save to disk]
  • Re-refined 5ivi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IVI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ivi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ivi] [5ivi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IVI
  • Community annotation for 5IVI at PDBWiki (http://pdbwiki.org)

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