5IWL Cell Adhesion date Mar 22, 2016
title Cd47-Diabody Complex
authors W.Di, K.M.Jude, K.C.Garcia
compound source
Molecule: 5f9 Diabody
Chain: B, A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus

Molecule: Leukocyte Surface Antigen Cd47
Chain: C, D
Fragment: Extracellular Domain (Unp Residues 19-132)
Synonym: Antigenic Surface Determinant Protein Oa3,Integrin Associated Protein,Iap,Protein Mer6;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd47, Mer6
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
symmetry Space Group: P 32 2 1
R_factor 0.221 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
103.280 103.280 131.130 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG, PCA, PGE enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (228 Kb) [Save to disk]
  • Biological Unit Coordinates (5iwl.pdb1.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 5IWL
  • CSU: Contacts of Structural Units for 5IWL
  • Structure Factors (186 Kb)
  • Retrieve 5IWL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IWL from S2C, [Save to disk]
  • Re-refined 5iwl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IWL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IWL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iwl_D] [5iwl_A] [5iwl_B] [5iwl] [5iwl_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5IWL: [IG_like] [IGv ] by SMART
  • Other resources with information on 5IWL
  • Community annotation for 5IWL at PDBWiki (http://pdbwiki.org)

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