5IY4 Dna Binding Protein date Mar 24, 2016
title Crystal Structure Of Human Pcna In Complex With The Pip Box
authors T.Jiang, M.Xu, Y.Wang
compound source
Molecule: Proliferating Cell Nuclear Antigen
Chain: A, C, E
Synonym: Pcna,Cyclin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pcna
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Dvc1 Pip Box
Chain: B, D, F
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 43 21 2
R_factor 0.207 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.647 71.647 322.208 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.95 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C, E


Primary referenceCrystal structure of human PCNA in complex with the PIP box of DVC1., Wang Y, Xu M, Jiang T, Biochem Biophys Res Commun. 2016 May 27;474(2):264-70. doi:, 10.1016/j.bbrc.2016.04.053. Epub 2016 Apr 13. PMID:27084448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (5iy4.pdb1.gz) 256 Kb
  • CSU: Contacts of Structural Units for 5IY4
  • Structure Factors (504 Kb)
  • Retrieve 5IY4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IY4 from S2C, [Save to disk]
  • Re-refined 5iy4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IY4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IY4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iy4_F] [5iy4_B] [5iy4_D] [5iy4_C] [5iy4] [5iy4_A] [5iy4_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IY4
  • Community annotation for 5IY4 at PDBWiki (http://pdbwiki.org)

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