5IYT Hydrolase date Mar 24, 2016
title Complex Structure Of Ev-B93 Main Protease 3c With N-Ethyl 4- Cycloheptyl-1,2-Dihydropyrazol-3-One-5-Yl)-Amino)-4-Oxo-2z-
authors Z.Kaczmarska, D.Becker, J.Rademann, M.Coll
compound source
Molecule: Ev-B93 Main Protease 3c
Chain: A, B
Ec: 3.4.22.29,3.6.1.15,3.4.22.28
Engineered: Yes
Mutation: Yes
Organism_scientific: Echovirus 1 (Strain Humanegyptfarouk
Organism_common: E-1
Organism_taxid: 103908
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest
symmetry Space Group: P 1 21 1
R_factor 0.187 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.460 52.330 62.270 90.00 103.73 90.00
method X-Ray Diffractionresolution 1.73 Å
ligand NZN enzyme Hydrolase E.C.3.4.22.29 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (5iyt.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (5iyt.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 5IYT
  • CSU: Contacts of Structural Units for 5IYT
  • Structure Factors (782 Kb)
  • Retrieve 5IYT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IYT from S2C, [Save to disk]
  • Re-refined 5iyt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IYT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IYT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iyt_A] [5iyt] [5iyt_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IYT
  • Community annotation for 5IYT at PDBWiki (http://pdbwiki.org)

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