OCA Atlas for 5J5O

5J5O

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6G0, GOL

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, A, B

Primary reference

mRNA cap analogues substituted in the tetraphosphate chain with CX2: identification of O-to-CCl2 as the first bridging modification that confers resistance to decapping without impairing translation., Rydzik AM, Warminski M, Sikorski PJ, Baranowski MR, Walczak S, Kowalska J, Zuberek J, Lukaszewicz M, Nowak E, W Claridge TD, Darzynkiewicz E, Nowotny M, Jemielity J, Nucleic Acids Res. 2017 Sep 6;45(15):8661-8675. doi: 10.1093/nar/gkx569. PMID:28666355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]

Biological Unit Coordinates (5j5o.pdb1.gz) 67 Kb

Biological Unit Coordinates (5j5o.pdb2.gz) 66 Kb

Biological Unit Coordinates (5j5o.pdb3.gz) 65 Kb

Biological Unit Coordinates (5j5o.pdb4.gz) 62 Kb

LPC: Ligand-Protein Contacts for 5J5O

CSU: Contacts of Structural Units for 5J5O

Structure Factors (520 Kb)

Retrieve 5J5O in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5J5O from S2C, [Save to disk]

Re-refined 5j5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5J5O in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j5o] [5j5o_A] [5j5o_B] [5j5o_C] [5j5o_D]

SWISS-PROT database:

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