5J86 Chaperone date Apr 07, 2016
title Crystal Structure Of Hsp90-Alpha N-Domain In Complex With 2, Dihydroxy-N-Methyl-5-(5-Oxo-4-O-Tolyl-4,5-Dihydro-1h-[1,2,4 3-Yl)-N-Thiophen-2-Ylmethyl-Benzamide
authors M.Amaral, P.Matias
compound source
Molecule: Heat Shock Protein Hsp 90-Alpha
Chain: A
Synonym: Heat Shock 86 Kda,Hsp86,Lipopolysaccharide-Associa Protein 2,Lps-Associated Protein 2,Renal Carcinoma Antigen
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hsp90aa1, Hsp90a, Hspc1, Hspca
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.205 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.078 90.240 98.089 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand 6GW enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProtein conformational flexibility modulates kinetics and thermodynamics of drug binding., Amaral M, Kokh DB, Bomke J, Wegener A, Buchstaller HP, Eggenweiler HM, Matias P, Sirrenberg C, Wade RC, Frech M, Nat Commun. 2017 Dec 22;8(1):2276. doi: 10.1038/s41467-017-02258-w. PMID:29273709
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (5j86.pdb1.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 5J86
  • CSU: Contacts of Structural Units for 5J86
  • Structure Factors (721 Kb)
  • Retrieve 5J86 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J86 from S2C, [Save to disk]
  • View 5J86 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J86
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j86_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J86
  • Community annotation for 5J86 at PDBWiki (http://pdbwiki.org)

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