5JA1	Ligase	date	Apr 11, 2016
title	Entf, A Terminal Nonribosomal Peptide Synthetase Module Boun Mbth-Like Protein Ybdz
authors	B.R.Miller, A.M.Gulick
compound		source
Molecule: Enterobactin Synthase Component F Chain: A Synonym: Enterochelin Synthase F,Serine-Activating Enzyme,S Ligase; Ec: 2.7.7.- Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Variant: W3110 Gene: Entf, B0586, Jw0578 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmis Expression_system_plasmid: Pet15b
Molecule: Enterobactin Biosynthesis Protein Ybdz Chain: B Engineered: Yes		Organism_scientific: Escherichia Coli (Strain K12) Organism_taxid: 83333 Strain: K12 Variant: W3110 Gene: Ybdz, B4511, Jw0577 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet15b
symmetry	Space Group: I 1 2 1	R_factor 0.185 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.185 57.679 183.945 90.00 97.93 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	75C, CL	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structures of a Nonribosomal Peptide Synthetase Module Bound to MbtH-Like Proteins Support a Highly Dynamic Domain Architecture., Miller BR, Drake EJ, Shi C, Aldrich CC, Gulick AM, J Biol Chem. 2016 Sep 5. pii: jbc.M116.746297. PMID:27597544

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (421 Kb) [Save to disk] Biological Unit Coordinates (5ja1.pdb1.gz) 413 Kb LPC: Ligand-Protein Contacts for 5JA1 CSU: Contacts of Structural Units for 5JA1 Structure Factors (416 Kb) Retrieve 5JA1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JA1 from S2C, [Save to disk] Re-refined 5ja1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JA1 in 3D

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Visual 3D analysis of 5JA1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l5ja1, region A:1-160 [Jmol] [rasmolscript] [script source]     - Domain d1u5ja1, region A:307-474 [Jmol] [rasmolscript] [script source]     - Domain d1s5ja1, region A:40-449 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ja1] [5ja1_A] [5ja1_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JA1: [MbtH ] by SMART

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