5JAV Hydrolase date Apr 12, 2016
title Crystal Structure Of Staphylococcal Nuclease Variant Delta+P Cryogenic Temperature
authors L.A.Skerritt, A.C.Robinson, J.L.Schlessman, B.Garcia-Moreno E.
compound source
Molecule: Thermonuclease
Chain: A
Fragment: Unp Residues 83-231
Synonym: Tnase, Micrococcal Nuclease, Staphylococcal Nuclea
Ec: 3.1.31.1
Engineered: Yes
Mutation: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Nuc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a+
symmetry Space Group: P 1 21 1
R_factor 0.191 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.178 60.353 38.425 90.00 93.52 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, THP enzyme Hydrolase E.C.3.1.31.1 BRENDA
note 5JAV supersedes 5EGZ
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (5jav.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 5JAV
  • CSU: Contacts of Structural Units for 5JAV
  • Structure Factors (237 Kb)
  • Retrieve 5JAV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JAV from S2C, [Save to disk]
  • Re-refined 5jav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JAV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JAV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jav_A] [5jav]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JAV: [SNc ] by SMART
    • Other resources with information on 5JAV
  • Community annotation for 5JAV at PDBWiki (http://pdbwiki.org)

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