5JDB		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
Gene Ontology	Chain Function Process Component A, F, B, E, C, D
Primary reference	Binding specificity of P[8] VP8* proteins of rotavirus vaccine strains with histo-blood group antigens., Sun X, Guo N, Li D, Jin M, Zhou Y, Xie G, Pang L, Zhang Q, Cao Y, Duan ZJ, Virology. 2016 Aug;495:129-35. doi: 10.1016/j.virol.2016.05.010. Epub 2016 May, 19. PMID:27209447

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk] Biological Unit Coordinates (5jdb.pdb1.gz) 322 Kb CSU: Contacts of Structural Units for 5JDB Structure Factors (1590 Kb) Retrieve 5JDB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JDB from S2C, [Save to disk] Re-refined 5jdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JDB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jdb] [5jdb_A] [5jdb_B] [5jdb_C] [5jdb_D] [5jdb_E] [5jdb_F] SWISS-PROT database:

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