5JKE Cell Adhesion date Apr 26, 2016
title Crystal Structure Of Human Izumo1-Juno Complex (Crystal Form
authors U.Ohto, H.Ishida, T.Shimizu
compound source
Molecule: Izumo Sperm-Egg Fusion Protein 1
Chain: A, C
Fragment: Unp Residues 20-255
Synonym: Oocyte Bindingfusion Factor,Obf,Sperm-Specific Pr Izumo;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Izumo1
Expression_system: Drosophila
Expression_system_taxid: 7215

Molecule: Sperm-Egg Fusion Protein Juno
Chain: B, D
Fragment: Unp Residues 20-228
Synonym: Folate Receptor 4,Folate Receptor Delta,Fr-Delta,I Receptor Protein Juno;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Izumo1r, Folr4, Juno
Expression_system: Drosophila
Expression_system_taxid: 7215
symmetry Space Group: P 2 21 21
R_factor 0.203 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.182 141.776 144.861 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.86 Å
ligand CL, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (299 Kb) [Save to disk]
  • Biological Unit Coordinates (5jke.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (5jke.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 5JKE
  • CSU: Contacts of Structural Units for 5JKE
  • Structure Factors (648 Kb)
  • Retrieve 5JKE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JKE from S2C, [Save to disk]
  • Re-refined 5jke structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JKE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JKE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jke_C] [5jke_A] [5jke] [5jke_B] [5jke_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JKE: [IG ] by SMART
  • Other resources with information on 5JKE
  • Community annotation for 5JKE at PDBWiki (http://pdbwiki.org)

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