OCA Atlas for 5JOR

5JOR

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

1PE, GOL, SO4

enzyme

Primary reference

T cells control the generation of nanomolar-affinity anti-glycan antibodies., Polonskaya Z, Deng S, Sarkar A, Kain L, Comellas-Aragones M, McKay CS, Kaczanowska K, Holt M, McBride R, Palomo V, Self KM, Taylor S, Irimia A, Mehta SR, Dan JM, Brigger M, Crotty S, Schoenberger SP, Paulson JC, Wilson IA, Savage PB, Finn MG, Teyton L, J Clin Invest. 2017 Mar 13. pii: 91192. doi: 10.1172/JCI91192. PMID:28287405

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (577 Kb) [Save to disk]

Biological Unit Coordinates (5jor.pdb1.gz) 148 Kb

Biological Unit Coordinates (5jor.pdb2.gz) 146 Kb

Biological Unit Coordinates (5jor.pdb3.gz) 148 Kb

Biological Unit Coordinates (5jor.pdb4.gz) 148 Kb

LPC: Ligand-Protein Contacts for 5JOR

CSU: Contacts of Structural Units for 5JOR

Structure Factors (1294 Kb)

Retrieve 5JOR in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5JOR from S2C, [Save to disk]

Re-refined 5jor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JOR in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jor] [5jor_A] [5jor_B] [5jor_C] [5jor_D] [5jor_E] [5jor_F] [5jor_H] [5jor_L]

SWISS-PROT database:

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